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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe3G085900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 278aa MW: 31608.3 Da PI: 6.1043 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.2 | 1.2e-17 | 75 | 128 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Aqcoe3G085900.1.p 75 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARVLGLQPRQIAIWFQNRRARWK 128 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130 | 9.7e-42 | 74 | 166 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqvk+LE++Fe +kLeperK++lar Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr++da+k++n++L++++++L++e++ Aqcoe3G085900.1.p 74 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARVLGLQPRQIAIWFQNRRARWKTKQLEKDYDILKRQFDAVKDNNDALQAQNKKLQAEIM 165 69**************************************************************************************9997 PP HD-ZIP_I/II 93 e 93 + Aqcoe3G085900.1.p 166 A 166 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.45E-19 | 59 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 70 | 130 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-17 | 73 | 134 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.03E-15 | 75 | 131 | No hit | No description |
Pfam | PF00046 | 5.3E-15 | 75 | 128 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-19 | 77 | 137 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.5E-5 | 101 | 110 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 105 | 128 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.5E-5 | 110 | 126 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.4E-16 | 130 | 169 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MTCNEMDFFP TNFMFQSHHE ENHHPPTTLN PILPLCIPQD FHGVASLLGK RSMSFSGVEN 60 GDEDLSDDGS QAGEKKRRLN MEQVKTLEKN FELGNKLEPE RKMQLARVLG LQPRQIAIWF 120 QNRRARWKTK QLEKDYDILK RQFDAVKDNN DALQAQNKKL QAEIMALKGG EPTESINLNK 180 ETEGSCSNRS ENSSEINLDI SRTPAIDSPL SSNPSRPLFP TSMRPASIVQ LLQSSSRADA 240 HCQKSQNPTQ EESICHIFNA IDDQPSFWPW SENQQYH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 130 | RRARWKTKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010256832.1 | 1e-162 | PREDICTED: homeobox-leucine zipper protein ATHB-13-like | ||||
Swissprot | Q8LC03 | 1e-109 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A0S2T007 | 1e-157 | A0A0S2T007_VITVI; Homodomain-leucine zipper protein ATHB-13-like protein | ||||
STRING | VIT_01s0026g01950.t01 | 1e-155 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-110 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe3G085900.1.p |